Abstract: There is no serious magnetohydrodynamics (MHD) problem when helium, water or molten salt of Flibe flows in high magnetic field. Thus helium, water and Flibe were proposed as candidate of coolant for fusion-fission hybrid reactor based on magnetic confinement. The effect on neutronics of hybrid reactor due to coolant was investigated. The analyses of neutron spectra and fuel breeding of blanket with different coolants were performed. Variations of tritium breeding ratio (TBR), blanket energy multiplication (M) and k_eff with operating time were also studied. MCNP code was used for neutron transport simulation. It is shown that spectra change greatly with different coolants. The blanket with helium exhibits very hard spectrum and good tritium breeding ability. And fission reactions are mainly from fast neutron. The blanket with water has soft spectrum and high energy multiplication factor. However, it needs to improve TBR. The blanket with Flibe has hard spectrum and less energy release.